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NIES collection MICROBIAL CULTURE COLLECTION General information Search on strains data List of strains Taxonomic index Alphabetical index How to order Cart Japanese HOME Search Strain Data Strain Data Strain Data Strain Data Reference --> Strain number NIES-905   Phylum Cyanophyta   Class Cyanophyceae   Scientific name Planktothrix agardhii (Gomont) Anagnostidis & Komárek   Synonym Oscillatoria agardhii Gomont 1892; Oscillatoria agardhii f. gomontii Elenkin 1949; Oscillatoria agardhii f. aequicrassa Elenkin 1949; Oscillatoria agardhii f. moebiusii Elenkin 1949; Oscillatoria agardhii f. lemmermannii Elenkin 1949; Oscillatoria agardhii f. wislouchii Elenkin 1949   Former name   Common name Blue-green alga ; Cyanobacteria   Locality (Date of collection) Windermere, Cumbria, England, U.K. (1975-**-**)   Latitude / Longitude   Habitat (Isolation source) Freshwater   History Isolator (Date of isolation) Jaworski, G. H. M. (1975-**-**)   Identified by Suda, Shoichiro (Reidentify)   State of strain Cryopreservation; Unialgal; Clonal; Axenic[2014 Mar]   Culture condition (Preculture condition) Medium:  CT   Temperature:  20 C Light intensity:  20-30 µmol photons/m2/sec, L/D cycle:  10L:14D Duration:  1 M   Gene information Whole-genome ( BJCD00000000 ) , 16S rRNA ( AB045896 LC455659 GQ994999 ) , 16S-23S rRNA ( GQ995017 ) , 23S rRNA ( LC455660 ) , mcyE ( AB638213 ) , gyrB ( GQ995042 ) , rpoB ( GQ995008 ) , rpoC1 ( GQ995067 )   Cell size (min - max)   Organization Filamentous  Characteristics Cyanobacterial water bloom (aoko) ; Toxicity ; Planktonic ; Genome decoded strain (Suzuki et al. 2019)   Other strain no. Other collection strain no. : CCAP 1459/11A   Remarks Cryopreserved; Axenic; Toxicity  Movie   Reference Asukabe, H., Akahori, S., Ueno, E., Nakayama, T., Yamashita, R., Arii, S., Harada, K., Imanishi, S. Y. 2020 Cyanobacterial classification with the toxicity using MALDI Biotyper. J. Am. Soc. Mass Spectrom., 31, 1572-1578. Keywords: cyanobacteria; MALDI Biotyper; microcystins; profiling Strain(s): 27,  39,  42,  73,  81,  87,  89,  100,  101,  102,  103,  104,  105,  107,  111,  112,  207,  208,  230,  266,  298,  416,  433,  478,  510,  512,  515,  592,  593,  604,  611,  808,  809,  835,  843,  846,  847,  905,  928,  931,  932,  945,  981,  989,  1025,  1043,  1058,  1061,  1064,  1068,  1069,  1071,  1076,  1085,  1099,  1101,  1105,  1113,  1115,  1126,  1133,  1134,  1135,  1144,  1157,  1215,  1642,  1643,  1652,  1668,  1672,  1673,  1677,  1678,  1698,  2087,  2131,  2412,  2665,  3708,  3733,  3734,  3736,  3755,  3756,  3757  PubMed: 32501712 DOI: 10.1021/jasms.0c00148 Suzuki, S., Yamaguchi, H., Kawachi, M. 2019 Draft genome sequences of three filamentous cyanobacterial strains, Dolichospermum planctonicum NIES-80, Planktothrix agardhii NIES-905, and Sphaerospermopsis reniformis NIES-1949. Microbiol. Resour. Ann.., 8, e00605-19 (article ID). Strain(s): 80,  905,  1949  PubMed: 31649090 DOI: 10.1128/MRA.00605-19 Chiu, Y.-T., Yen, H.-K., Lin, T.-F. 2016 An alternativemethodtoquantify2-MIB producing cyanobacteriain in drinking water reservoirs: Method development and field applications. Environ. Res., 151, 618-627. Keywords: Cyanobacteria; 2-methylisoborneol(2-MIB); 2-MIB-synthesis gene(mibC gene); Tasteandodor; Real-timePCR Strain(s): 81,  512,  824,  905,  2104,  2116  PubMed: 27607443 DOI: 10.1016/j.envres.2016.08.034 Gaget, V., Welker, M., Rippka, R., de Marsac, N. T. 2015 A polyphasic approach leading to the revision of the genus Planktothrix (Cyanobacteria) and its type species, P. agardhii, and proposal for integrating the emended valid botanical taxa, as well as three new species, Planktothrix paucivesiculata sp. nov.ICNP, Planktothrix tepida sp. nov.ICNP, Planktothrix serta sp. nov.ICNP, as genus and species names with nomenclatural standing under th ICNP. Syst. Appl. Microbiol., 38, 141-158. Keywords: Polyphasic taxonomy; 16S rRNA gene; ITS; MLST; gyrB; rpoB; rpoC1; Planktothrix Anagnostidis & Komárek 1988ICN emend. gen. nov. ICNP Strain(s): 905,  928,  1266  DOI: 10.1016/j.syapm.2015.02.004 Hodoki, Y., Ohbayashi, K., Kobayashi, Y., Okuda, N., Nakano, S. 2012 Detection and identification of potentially toxic cyanobacteria: Ubiquitous distribution of Microcystis aeruginosa and Cuspidothrix issatschenkoi in Japanese lakes. Harmful Algae, 16, 49-57. Keywords: Anatoxin-a; Automated rRNA intergenic spacer analysis (ARISA); Cuspidothrix issatschenkoi; Cyanotoxin; Microcystin; Microcystis aeruginosa Strain(s): 30,  40,  77,  102,  111,  230,  512,  843,  905,  928,  932,  937,  991,  1645,  1669,  1698,  1729,  1950,  2116  DOI: 10.1016/j.hal.2012.01.003 Suda, S., Watanabe, M. M., Otsuka, S., Mahakahant, A., Yongmanitchai, W., Nopartnaraporn, N., Liu, Y., Day, J. G. 2002 Taxonomic revision of water-bloom-forming species of oscillatorioid cyanobacteria. Int. J. Syst. Evol. Microbiol., 52, 1577-1595. Keywords: cyanobacteria; water bloom; oscillatorioid; nomenclature; taxonomy Strain(s): 204,  205,  207,  594,  595,  596,  610,  844,  845,  846,  847,  905,  911,  912,  913,  915,  916,  917,  918  PubMed: 12361260 DOI: 10.1099/00207713-52-5-1577 Sano, T., Usui, T., Ueda, K., Osada, H., Kaya, K. 2001 Isolation of new protein phosphatase inhibitors from two cyanobacteria species, Planktothrix spp. J. Nat. Prod., 64, 1052-1055. Strain(s): 905,  928  PubMed: 11520225 DOI: 10.1021/np0005356 Unauthorized copying and replication of text, images, and tables in our homepage, are prohibited. PAGE TOP 16-2 Onogawa, Tsukuba, Ibaraki 305-8506, JAPAN TEL +81-29-850-2556 FAX +81-29-850-2587 Send us an e-mail () FAQ Privacy policy ©National Institute for Environmental Studies. All Rights Reserved. Since 1 October 2001